dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation

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Citation

Please cite the following papers when using the server and data at this website:

1.Chen J, Long R, Wang X-l, Liu B, Chou K-C: dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation. Scientific Reports 2016, 6:32333.

2.Liu B, Zhang D, Xu R, Xu J, Wang X, Chen Q, Dong Q, Chou K-C: Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics 2014, 30(4):472-479.

3.Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic acids research 1997, 25(17):3389-3402.

4.Finn RD, Clements J, Eddy SR: HMMER web server: interactive sequence similarity searching. Nucleic acids research 2011, 39(suppl_2):W29-W37.

5.Remmert M, Biegert A, Hauser A, Söding J: HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature methods 2012, 9(2):173-175.

6.Margelevicius M, Venclovas C: Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison. BMC Bioinformatics 2010, 11:89.


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