DSCA-HLAII
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Enter the query peptide and HLA-II sequences in
FASTA
format :
Peptide
HLA-alpha
Select HLA-alpha from List
HLA-beta
Select HLA-beta from List
Examples
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Input Format:
(1) Input "Peptide": A peptide sequence with a length between 4 and 50.
(2) Input "HLA-alpha": The HLA-II α-chain sequence. You may use the Select button below to choose the sequence corresponding to a common allele.
(3) Input "HLA-beta": The HLA-II β-chain sequence. You may use the Select button below to choose the sequence corresponding to a common allele.
Output Format:
PeptideSeq
HLA_AlphaSeq
HLA_BetaSeq
Score
Presentation
Binding_core
DLRSWTAVDTAAQISEQ
EDIVADHVASY...
RDSPEDFVYQF...
1
TRUE
WTAVDTAAQ
Description:
(1)
PeptideSeq
: The input peptide sequence
(2)
HLA_AlphaSeq
: The input HLA-II alpha-chain sequence
(3)
HLA_BetaSeq
: The input HLA-II beta-chain sequence
(4)
Score
: The predicted presentation score
(5)
Presentation
: Whether presentation occurs
(6)
Binding_core
: The predicted binding core