Welcome to PDB-BRE’s documentation!

Contents:

• 1 Installation guide
  • 1.1 Download stand-alone package
  • 1.2 Operating systems compatibility and requirements
    • 1.2.1 Network connection
    • 1.2.2 UniProt mapping database
    • 1.2.3 Windows PowerShell (for Windows)
  • 1.3 Package installation
    • 1.3.1 For Liunx
    • 1.3.2 For Windows
    • 1.3.3 For OS X
  • 1.4 Installation test
• 2 Quickstart
  • 2.1 Data collection
  • 2.2 PDB-BRE-InterPair
    • 2.2.1 Example description of PDB-BRE-InterPair
    • 2.2.2 Output description of PDB-BRE-InterPair
  • 2.3 PDB-BRE-DonSeqLabel
  • 2.4 PDB-BRE-ProSeqLabel
  • 2.5 PDB-BRE-PPISeqLabel
• 3 Tutorial
  • 3.1 Introduction
  • 3.2 For protein-protein interaction
  • 3.3 For peptide-protein interaction
  • 3.4 For DNA-protein interaction, NA-protein interaction and NA hybrid-protein interaction
  • 3.5 For ligand-protein interaction
  • 3.6 References
• 4 Command line tools
  • 4.1 PDB-BRE-InterPair option description
    • 4.1.1 Required Options of PDB-BRE-InterPair
    • 4.1.2 Optional Options of PDB-BRE-InterPair
  • 4.2 PDB-BRE-DonSeqLabel option description
    • 4.2.1 Required Options of PDB-BRE-DonSeqLabel
    • 4.2.2 Optional Options of PDB-BRE-DonSeqLabel
  • 4.3 PDB-BRE-ProSeqLabel option description
    • 4.3.1 Required Options of PDB-BRE-ProSeqLabel
    • 4.3.2 Optional Options of PDB-BRE-ProSeqLabel
  • 4.4 PDB-BRE-PPISeqLabel option description
    • 4.4.1 Required Options of PDB-BRE-PPISeqLabel
    • 4.4.2 Optional Options of PDB-BRE-PPISeqLabel
• 5 Authors
  • 5.1 Author Contributions
  • 5.2 Contact
  • 5.3 Citation