Code and Dataset

The supplementary files consists of the main python programs and the used datasets. To use these programs or datasets, please download following files:

--The source zip file for stand-alone package of PL-search:

Stand-alone package: [PL_search-V1]

--Benchmark datasets:

[SCOP1.59] [SCOPe2.06]

--Datasets of constructed profile link:

[Profile-link from HHblits on scop1.59] [Profile-link from HHblits on scope2.06]
[Profile-link from PSI-BLAST on scop1.59] [Profile-link from PSI-BLAST on scope2.06]
[Profile-link from JackHMMER on scop1.59] [Profile-link from JackHMMER on scope2.06]

--Datasets of constructed double link:

[Double-link from HHblits on scop1.59] [Double-link from HHblits on scope2.06]
[Double-link from PSI-BLAST on scop1.59] [Double-link from PSI-BLAST on scope2.06]
[Double-link from JackHMMER on scop1.59] [Double-link from JackHMMER on scope2.06]

--HHblist, JackHMMER and PSI-BLAST produce null results for thoes protein sequences on two versions of Structural Classification of Proteins (SCOP) databases:

[null_result_list.pdf]