iDRPro-SC: Identifying DNA-Binding Proteins and RNA-Binding Proteins based on Subfunction Classifiers

Materials

The benchmark dataset and the TEST474 test dataset used in this study were constructed by Zhang et al [1], and the PDB186 test dataset and the PDB676 test dataset used in this study were constructed by Avdesh et al [2], which can be downloaded from the following links:

Benchmark dataset

TEST474 test dataset

PDB186 test dataset

PDB676 test dataset

Tomato Annotation Genome Dataset [3]:

ITAG4.1

Reference:

[1] Zhang J, Chen Q, Liu B: DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. IEEE/ACM Trans Comput Biol Bioinform 2021, 18(4):1451-1463.

[2] Mishra A, Pokhrel P, Hoque MT. StackDPPred: a stacking based prediction of DNA-binding protein from sequence, Bioinformatics 2019;35:433-441.

[3] Tomato Genome C: The tomato genome sequence provides insights into fleshy fruit evolution. Nature 2012, 485(7400):635-641.


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Bin Liu
bliu@bliulab.net
School of Computer Science and Technology, Beijing Institute of Technology, China.

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